Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
tolBPeriplasmic component of the Tol biopolymer transport system. (365 aa)    
Predicted Functional Partners:
ompA-4
Outer membrane protein or related peptidoglycan-associated (lipo)protein; Belongs to the Pal lipoprotein family.
 
 0.966
Minf_1059
Conserved hypothetical protein.
  
 
 0.886
tolQ-7
Biopolymer transport protein.
 
  
 0.809
exbD-7
Biopolymer transport protein.
 
  
 0.734
lolE
ABC-type transport system, involved in lipoprotein release, permease component.
  
   
 0.668
nrfG-10
TPR repeats containing protein.
 
  
 0.644
tonB-8
Periplasmic protein TonB; Links inner and outer membranes.
   
 
 0.632
Minf_0751
Outer membrane protein.
  
  
 0.630
nrfG-4
TPR repeats containing protein.
  
  
 0.584
ompA-3
Outer membrane protein or related peptidoglycan-associated (lipo)protein.
  
 
 0.511
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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