STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppE_1Dipeptide-binding protein DppE precursor. (543 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transport system permease protein OppB.
 
 0.912
oppC_2
Oligopeptide transport system permease protein OppC.
 
 0.906
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.876
oppF_2
Oligopeptide transport ATP-binding protein OppF.
 
 0.843
dppE_6
Dipeptide-binding protein DppE precursor.
  
  
 
0.674
appA_1
Oligopeptide-binding protein AppA precursor.
   
 
 
0.654
appA_2
Oligopeptide-binding protein AppA precursor.
   
 
  0.654
ysdC
Putative aminopeptidase YsdC.
       0.642
gsiC
Glutathione transport system permease protein GsiC.
 
 
 0.636
oppD_1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.625
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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