STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynBBeta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (551 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.943
OFA13211.1
Melibiose:sodium symporter.
 
    0.808
uidA_2
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.790
xylA_1
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.667
xylA_2
Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.656
OFA12601.1
O-glycosyl hydrolase family 30; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.612
lacZ
Beta-galactosidase LacZ.
 
  
 0.533
lacR_1
HTH-type transcriptional regulator LacR.
 
     0.530
pgdA
peptidoglycan-N-acetylglucosamine deacetylase.
    
 0.504
abf2
Intracellular exo-alpha-L-arabinofuranosidase 2.
 
  
 0.477
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.