Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xynBBeta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (551 aa)    
Predicted Functional Partners:
xylA_1
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.938
xylA_2
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.936
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.920
uidA_2
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.855
afr
1,5-anhydro-D-fructose reductase.
    
  0.836
OFA13211.1
Melibiose:sodium symporter.
 
    0.808
OFA12601.1
O-glycosyl hydrolase family 30; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.635
uxaC_1
Uronate isomerase.
     
 0.587
uidA_1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.587
uxaC_2
Uronate isomerase.
     
 0.587
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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