STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atl_1Bifunctional autolysin precursor. (223 aa)    
Predicted Functional Partners:
lytC
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
 0.907
nagZ
Beta-hexosaminidase precursor.
    
  0.799
OFA11346.1
CAAX amino terminal protease self- immunity.
  
     0.678
OFA12566.1
Hypothetical protein.
 
  
  0.630
OFA09794.1
S-layer protein precursor.
  
     0.627
OFA09807.1
Hypothetical protein.
 
  
  0.625
OFA12841.1
S-layer protein precursor.
  
     0.623
yafL
Putative endopeptidase YafL precursor.
 
    0.622
OFA11404.1
Hypothetical protein.
 
     0.621
OFA12574.1
Hypothetical protein.
  
     0.612
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.