STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgK_22-dehydro-3-deoxygluconokinase. (320 aa)    
Predicted Functional Partners:
OFA12862.1
Xylose isomerase-like TIM barrel.
 
  0.959
rmpB
3-hexulose-6-phosphate isomerase.
 
    0.901
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.901
OFA12863.1
Hypothetical protein.
 
     0.900
OFA12865.1
3-hexulose-6-phosphate synthase.
 
    0.895
guaA_1
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.887
OFA13066.1
Hypothetical protein.
 
  0.860
kdgA_1
KHG/KDPG aldolase.
 
 
 0.849
kdgK_4
2-dehydro-3-deoxygluconokinase.
  
  
 
0.848
kdgA_2
KHG/KDPG aldolase.
 
 
 0.836
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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