STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFA12685.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
OFA12684.1
AAA-like domain protein.
  
  
 0.900
OFA12686.1
Hypothetical protein.
       0.815
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.797
OFA12683.1
Hypothetical protein.
       0.796
OFA12687.1
Hypothetical protein.
       0.769
OFA12688.1
Hypothetical protein.
       0.769
traG
Conjugal transfer protein TraG.
  
    0.642
OFA12681.1
Hypothetical protein.
       0.641
OFA12679.1
Hypothetical protein.
       0.640
OFA12680.1
Hypothetical protein.
       0.631
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.