STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsHPutative glycosyltransferase EpsH. (244 aa)    
Predicted Functional Partners:
tagF_1
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
 
 
  0.874
tagF_2
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase.
 
 
  0.831
epsE
Putative glycosyltransferase EpsE.
  
     0.732
tuaA
Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase.
 
  
 0.553
dacA_1
D-alanyl-D-alanine carboxypeptidase DacA precursor; Belongs to the peptidase S11 family.
  
    0.543
OFA13090.1
NAD dependent epimerase/dehydratase family protein.
  
 
 0.539
OFA09493.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
 
 0.534
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.521
pgdA
peptidoglycan-N-acetylglucosamine deacetylase.
  
 
 0.502
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
 
  
 0.493
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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