STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFA11177.1N-6 DNA methylase. (336 aa)    
Predicted Functional Partners:
OFA09497.1
Competence protein CoiA-like family protein.
  
     0.750
bepA
Beta-barrel assembly-enhancing protease.
  
     0.737
glpE_2
Thiosulfate sulfurtransferase GlpE.
  
    0.735
OFA11155.1
Hypothetical protein; Belongs to the UPF0473 family.
  
     0.724
OFA10703.1
Bacterial ABC transporter protein EcsB.
 
     0.708
OFA11172.1
Type IV pilin biogenesis protein.
 
     0.706
OFA09499.1
Hypothetical protein.
  
     0.688
dnaB
Replication initiation and membrane attachment protein.
  
     0.685
OFA11173.1
Hypothetical protein.
 
     0.682
ackA_1
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.682
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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