STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppE_6Dipeptide-binding protein DppE precursor. (539 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transport system permease protein OppB.
 
 0.979
oppC_2
Oligopeptide transport system permease protein OppC.
 
 0.977
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.970
oppF_2
Oligopeptide transport ATP-binding protein OppF.
 
 0.969
gsiC
Glutathione transport system permease protein GsiC.
 
 
 0.908
oppF_1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.901
oppD_1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.897
oppC_1
Oligopeptide transport system permease protein OppC.
 
 
 0.895
ykfB
L-Ala-D/L-Glu epimerase.
  
    0.759
oppA_2
Oligopeptide-binding protein OppA precursor.
  
  
 
0.703
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.