STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_2Putative ABC transporter ATP-binding protein YbhF. (245 aa)    
Predicted Functional Partners:
ybhR_2
Inner membrane transport permease YbhR.
 
  0.974
srpR
HTH-type transcriptional regulator SrpR.
 
     0.931
livF
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
   
 
0.918
ybhR_1
Inner membrane transport permease YbhR.
 
  0.901
ecfA1
Energy-coupling factor transporter ATP-binding protein EcfA1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.895
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
 
   
 
0.887
bm3R1
HTH-type transcriptional repressor Bm3R1.
 
     0.663
OFA13203.1
ABC-2 family transporter protein.
   
  0.653
OFA12312.1
ABC-2 family transporter protein.
   
  0.653
OFA12313.1
ABC-2 family transporter protein.
   
  0.653
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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