STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrB_3ABC transporter ATP-binding protein YtrB. (246 aa)    
Predicted Functional Partners:
drrA_3
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 
  0.951
OFA09409.1
Hypothetical protein.
  
 
  0.857
OFA09407.1
Hypothetical protein.
       0.773
OFA12194.1
Putative ABC transporter ATP-binding protein.
  
 
  0.691
OFA13203.1
ABC-2 family transporter protein.
  
  0.670
OFA12312.1
ABC-2 family transporter protein.
  
  0.670
OFA12313.1
ABC-2 family transporter protein.
  
  0.670
cysS
cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.614
OFA10621.1
ABC-2 family transporter protein.
  
  0.612
lolD
Lipoprotein-releasing system ATP-binding protein LolD.
 
 
 
0.598
Your Current Organism:
Lactobacillus sunkii
NCBI taxonomy Id: 481719
Other names: DSM 19904, JCM 15039, L. sunkii, Lactobacillus sp. YIT 11161, Lactobacillus sp. YIT 11442, Lactobacillus sp. YIT 11539, Lactobacillus sp. YIT 11549, Lactobacillus sp. YIT 11557, Lactobacillus sp. YIT 11635, Lactobacillus sunkii Watanabe et al. 2009, NRIC 0744, YIT 11161
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.