STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACX67907.1PFAM: YbbR family protein; KEGG: pjd:Pjdr2_5630 YbbR family protein. (494 aa)    
Predicted Functional Partners:
dacA
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.972
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
  
 0.859
dacB
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.777
ACX67909.1
KEGG: pjd:Pjdr2_5632 putative transmembrane anti-sigma factor.
 
     0.725
ACX67910.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-W factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: pjd:Pjdr2_5633 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.592
ACX68498.1
PFAM: YycH family protein; KEGG: pjd:Pjdr2_6253 YycH family protein.
  
    0.480
ACX63880.1
PFAM: protein of unknown function DUF1292; KEGG: pjd:Pjdr2_4343 protein of unknown function DUF1292; Belongs to the UPF0473 family.
  
     0.479
ACX68510.1
Diguanylate cyclase and phosphoesterase; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
  
 0.462
ACX63875.1
KEGG: pjd:Pjdr2_4355 hypothetical protein.
  
     0.450
ACX67656.1
PFAM: Primosomal DnaI domain protein; SMART: AAA ATPase; KEGG: pjd:Pjdr2_4829 AAA ATPase.
 
     0.449
Your Current Organism:
Paenibacillus sp. Y412MC10
NCBI taxonomy Id: 481743
Other names: P. sp. Y412MC10
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