Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL71234.1 | SDL71261.1 | SAMN05216244_0505 | SAMN05216244_0506 | Hypothetical protein. | Protein of unknown function. | 0.679 |
SDL71234.1 | SDM72300.1 | SAMN05216244_0505 | SAMN05216244_3308 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0374 family. | 0.693 |
SDL71234.1 | SDN04713.1 | SAMN05216244_0505 | SAMN05216244_4069 | Hypothetical protein. | Site-specific DNA-methyltransferase (adenine-specific). | 0.685 |
SDL71234.1 | SDN05274.1 | SAMN05216244_0505 | SAMN05216244_4086 | Hypothetical protein. | Phosphoesterase RecJ domain-containing protein. | 0.711 |
SDL71234.1 | def | SAMN05216244_0505 | SAMN05216244_0759 | Hypothetical protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.754 |
SDL71234.1 | ezrA | SAMN05216244_0505 | SAMN05216244_4059 | Hypothetical protein. | Septation ring formation regulator; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.743 |
SDL71234.1 | gpsB | SAMN05216244_0505 | SAMN05216244_0371 | Hypothetical protein. | DivIVA domain-containing protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.738 |
SDL71234.1 | recU | SAMN05216244_0505 | SAMN05216244_0363 | Hypothetical protein. | Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.763 |
SDL71234.1 | rpsT | SAMN05216244_0505 | SAMN05216244_3994 | Hypothetical protein. | Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.681 |
SDL71234.1 | spxA | SAMN05216244_0505 | SAMN05216244_1427 | Hypothetical protein. | Regulatory protein spx; Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development- promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress. Belongs to the ArsC family. Spx subfamily. | 0.694 |
SDL71261.1 | SDL71234.1 | SAMN05216244_0506 | SAMN05216244_0505 | Protein of unknown function. | Hypothetical protein. | 0.679 |
SDM72300.1 | SDL71234.1 | SAMN05216244_3308 | SAMN05216244_0505 | Hypothetical protein; Belongs to the UPF0374 family. | Hypothetical protein. | 0.693 |
SDM72300.1 | gpsB | SAMN05216244_3308 | SAMN05216244_0371 | Hypothetical protein; Belongs to the UPF0374 family. | DivIVA domain-containing protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.503 |
SDM72300.1 | recU | SAMN05216244_3308 | SAMN05216244_0363 | Hypothetical protein; Belongs to the UPF0374 family. | Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.485 |
SDN04713.1 | SDL71234.1 | SAMN05216244_4069 | SAMN05216244_0505 | Site-specific DNA-methyltransferase (adenine-specific). | Hypothetical protein. | 0.685 |
SDN04713.1 | SDN05274.1 | SAMN05216244_4069 | SAMN05216244_4086 | Site-specific DNA-methyltransferase (adenine-specific). | Phosphoesterase RecJ domain-containing protein. | 0.573 |
SDN04713.1 | def | SAMN05216244_4069 | SAMN05216244_0759 | Site-specific DNA-methyltransferase (adenine-specific). | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.467 |
SDN04713.1 | ezrA | SAMN05216244_4069 | SAMN05216244_4059 | Site-specific DNA-methyltransferase (adenine-specific). | Septation ring formation regulator; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.756 |
SDN04713.1 | gpsB | SAMN05216244_4069 | SAMN05216244_0371 | Site-specific DNA-methyltransferase (adenine-specific). | DivIVA domain-containing protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.535 |
SDN04713.1 | spxA | SAMN05216244_4069 | SAMN05216244_1427 | Site-specific DNA-methyltransferase (adenine-specific). | Regulatory protein spx; Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development- promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress. Belongs to the ArsC family. Spx subfamily. | 0.439 |
page 1 of 3