STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL71261.1Protein of unknown function. (152 aa)    
Predicted Functional Partners:
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
    
 
 0.899
SDM98463.1
Hypothetical protein.
  
    0.733
SDM87490.1
HlyD family secretion protein.
  
     0.705
SDL71234.1
Hypothetical protein.
     
 0.679
SDM00726.1
Sporulation protein YhaL.
  
     0.669
SDL97528.1
Spore coat protein CotO.
  
     0.666
SDL72460.1
YlzJ-like protein.
  
     0.664
SDM71311.1
DUF4097 and DUF4098 domain-containing protein YvlB.
  
     0.650
SDL74624.1
Hypothetical protein.
  
     0.644
SDM87519.1
Glyoxalase-like domain-containing protein.
  
     0.635
Your Current Organism:
Sediminibacillus halophilus
NCBI taxonomy Id: 482461
Other names: CCM 7364, CECT 7148, CGMCC 1.6199, DSM 18088, S. halophilus, Sediminibacillus halophilus Carrasco et al. 2008, strain EN8d
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