Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL69914.1 | SDM20130.1 | SAMN05216244_0455 | SAMN05216244_1897 | 5'-3' exonuclease. | Superfamily II DNA or RNA helicase, SNF2 family. | 0.754 |
SDL69914.1 | SDM40535.1 | SAMN05216244_0455 | SAMN05216244_2371 | 5'-3' exonuclease. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.981 |
SDL69914.1 | polA | SAMN05216244_0455 | SAMN05216244_4105 | 5'-3' exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.730 |
SDL69914.1 | rpoB | SAMN05216244_0455 | SAMN05216244_0095 | 5'-3' exonuclease. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.472 |
SDL84290.1 | SDM20130.1 | SAMN05216244_0944 | SAMN05216244_1897 | Hypothetical protein. | Superfamily II DNA or RNA helicase, SNF2 family. | 0.754 |
SDL84290.1 | SDM40535.1 | SAMN05216244_0944 | SAMN05216244_2371 | Hypothetical protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.664 |
SDL84290.1 | SDM92179.1 | SAMN05216244_0944 | SAMN05216244_3768 | Hypothetical protein. | Monoamine oxidase. | 0.454 |
SDL84290.1 | SDN04073.1 | SAMN05216244_0944 | SAMN05216244_4049 | Hypothetical protein. | Acetoin utilization protein AcuC. | 0.922 |
SDL84290.1 | rpoA | SAMN05216244_0944 | SAMN05216244_0131 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.764 |
SDL84290.1 | rpoB | SAMN05216244_0944 | SAMN05216244_0095 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.719 |
SDM20130.1 | SDL69914.1 | SAMN05216244_1897 | SAMN05216244_0455 | Superfamily II DNA or RNA helicase, SNF2 family. | 5'-3' exonuclease. | 0.754 |
SDM20130.1 | SDL84290.1 | SAMN05216244_1897 | SAMN05216244_0944 | Superfamily II DNA or RNA helicase, SNF2 family. | Hypothetical protein. | 0.754 |
SDM20130.1 | SDM40535.1 | SAMN05216244_1897 | SAMN05216244_2371 | Superfamily II DNA or RNA helicase, SNF2 family. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.892 |
SDM20130.1 | SDM92179.1 | SAMN05216244_1897 | SAMN05216244_3768 | Superfamily II DNA or RNA helicase, SNF2 family. | Monoamine oxidase. | 0.794 |
SDM20130.1 | SDN04073.1 | SAMN05216244_1897 | SAMN05216244_4049 | Superfamily II DNA or RNA helicase, SNF2 family. | Acetoin utilization protein AcuC. | 0.860 |
SDM20130.1 | polA | SAMN05216244_1897 | SAMN05216244_4105 | Superfamily II DNA or RNA helicase, SNF2 family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.886 |
SDM20130.1 | rpoA | SAMN05216244_1897 | SAMN05216244_0131 | Superfamily II DNA or RNA helicase, SNF2 family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.941 |
SDM20130.1 | rpoB | SAMN05216244_1897 | SAMN05216244_0095 | Superfamily II DNA or RNA helicase, SNF2 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.939 |
SDM20130.1 | rpoC | SAMN05216244_1897 | SAMN05216244_0096 | Superfamily II DNA or RNA helicase, SNF2 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.883 |
SDM20130.1 | rpoZ | SAMN05216244_1897 | SAMN05216244_0660 | Superfamily II DNA or RNA helicase, SNF2 family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.941 |
page 1 of 4