STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM23333.1Predicted dehydrogenase. (391 aa)    
Predicted Functional Partners:
SDM23358.1
Sugar phosphate isomerase/epimerase.
 
 
  0.949
SDM23419.1
Hypothetical protein.
 
  
  0.921
SDM23390.1
Predicted dehydrogenase.
 
    
0.839
SDL83077.1
5-deoxy-glucuronate isomerase.
 
  
 0.775
SDL87409.1
Sugar phosphate isomerase/epimerase.
  
 
  0.764
SDM49761.1
Sugar phosphate isomerase/epimerase.
 
 
  0.746
SDL87436.1
Sugar phosphate isomerase/epimerase.
  
 
  0.704
SDL87527.1
fatty-acyl-CoA synthase.
 
 
  0.569
SDM21622.1
2-dehydro-3-deoxygluconokinase.
 
 
  0.525
SDL82432.1
2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family.
 
 
  0.521
Your Current Organism:
Sediminibacillus halophilus
NCBI taxonomy Id: 482461
Other names: CCM 7364, CECT 7148, CGMCC 1.6199, DSM 18088, S. halophilus, Sediminibacillus halophilus Carrasco et al. 2008, strain EN8d
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.