STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM30699.1Paired small multidrug resistance pump. (159 aa)    
Predicted Functional Partners:
SDM30668.1
Paired small multidrug resistance pump.
 
  
0.904
SDM88544.1
Small multidrug resistance pump.
 
   
 0.767
SDL89489.1
Small multidrug resistance pump.
 
   
 0.758
SDM30744.1
Transcriptional regulator, XRE family.
       0.455
SDM30775.1
Protein of unknown function.
       0.455
SDM57969.1
DNA-binding transcriptional regulator, AcrR family.
  
    0.409
Your Current Organism:
Sediminibacillus halophilus
NCBI taxonomy Id: 482461
Other names: CCM 7364, CECT 7148, CGMCC 1.6199, DSM 18088, S. halophilus, Sediminibacillus halophilus Carrasco et al. 2008, strain EN8d
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.