STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recF_1DNA replication and repair protein RecF. (548 aa)    
Predicted Functional Partners:
OPX46352.1
YqaJ-like viral recombinase domain protein.
       0.778
OPX46347.1
Hypothetical protein.
       0.773
OPX46348.1
Hypothetical protein.
       0.773
OPX46349.1
Hypothetical protein.
       0.773
OPX46350.1
Hypothetical protein.
       0.773
OPX46345.1
Hypothetical protein.
       0.746
OPX46346.1
Hypothetical protein.
       0.746
acpP_1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
       0.736
spo0A_1
Stage 0 sporulation protein A.
       0.569
OPX46342.1
Hypothetical protein.
       0.569
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.