STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX46393.1Holin family protein. (167 aa)    
Predicted Functional Partners:
OPX46391.1
Hypothetical protein.
       0.773
OPX46392.1
Hypothetical protein; S-layer homology domain.
       0.773
OPX46394.1
Phage-related minor tail protein.
       0.737
OPX46390.1
Hypothetical protein.
       0.561
OPX46387.1
Hypothetical protein.
       0.540
OPX46388.1
Hypothetical protein.
       0.540
OPX46389.1
Hypothetical protein.
       0.540
OPX46385.1
Hypothetical protein.
       0.529
OPX46386.1
Hypothetical protein.
       0.529
OPX46384.1
Phage tail protein.
       0.430
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.