STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspC2_1Small, acid-soluble spore protein C2. (61 aa)    
Predicted Functional Partners:
cotS
Spore coat protein S.
  
     0.593
sspC1
Small, acid-soluble spore protein C1.
  
     0.582
OPX45862.1
Hypothetical protein.
 
     0.558
yabP
Spore protein YabP.
  
     0.545
OPX42574.1
PTS HPr component phosphorylation site.
  
     0.537
spoIIIAH
Stage III sporulation protein AH.
  
   
 0.494
ssbB_2
Single-stranded DNA-binding protein B.
  
     0.479
bamD
Outer membrane protein assembly factor BamD.
  
     0.460
OPX45860.1
Hypothetical protein.
       0.438
gpr_1
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.410
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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