Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_2Putative ABC transporter ATP-binding protein YbhF. (349 aa)    
Predicted Functional Partners:
OPX45871.1
Hypothetical protein.
 
  
 0.965
OPX45872.1
Hypothetical protein.
 
  
 0.957
ybhS
Inner membrane transport permease YbhS.
      0.900
tauB_1
Taurine import ATP-binding protein TauB.
 
     
0.897
OPX45012.1
Hypothetical protein.
 
  
 0.853
OPX45247.1
Hypothetical protein.
 
  
 0.819
OPX45248.1
Hypothetical protein.
 
  
 0.819
OPX45011.1
Hypothetical protein.
 
  
 0.819
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
     
0.738
livF_1
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
     
0.719
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.