Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPX45871.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.965
OPX45872.1
Hypothetical protein.
 
  
 0.956
ybhF_3
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.853
ybhF_4
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.853
OPX45247.1
Hypothetical protein.
 
  
 0.818
OPX45011.1
Hypothetical protein.
 
  
 0.818
yfkN_1
Trifunctional nucleotide phosphoesterase protein YfkN precursor; Belongs to the 5'-nucleotidase family.
       0.561
acpP_2
Acyl carrier protein.
       0.452
lcfB_1
long-chain-fatty-acid--CoA ligase.
       0.452
OPX45876.1
Hypothetical protein.
       0.436
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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