STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcfB_1long-chain-fatty-acid--CoA ligase. (495 aa)    
Predicted Functional Partners:
ppsC
Plipastatin synthase subunit C.
 0.997
mbtB_2
Phenyloxazoline synthase MbtB; Belongs to the ATP-dependent AMP-binding enzyme family.
0.969
ppsE_2
Phthiocerol synthesis polyketide synthase type I PpsE.
 
 0.934
tycC_2
Tyrocidine synthase 3.
 
    
0.921
pksJ
Polyketide synthase PksJ.
 
0.915
acpP_2
Acyl carrier protein.
  
  0.886
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.826
ppsD_1
Plipastatin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
 
0.807
mbtB_1
Phenyloxazoline synthase MbtB.
0.784
ppsE_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.
 
 0.767
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.