STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX45609.1NAD-dependent malic enzyme. (391 aa)    
Predicted Functional Partners:
pta
Phosphate acetyltransferase.
 
 
 0.964
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.962
ldh_1
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 0.951
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.925
fumA
Fumarate hydratase class I, aerobic.
 
 
 0.923
ldh_2
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 0.920
gltA
Citrate synthase; Belongs to the citrate synthase family.
  
 0.891
ttdA_2
L(+)-tartrate dehydratase subunit alpha.
  
 
 0.880
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 
 0.879
ilvB_1
Acetolactate synthase large subunit.
  
 
 0.873
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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