STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srfABSurfactin synthase subunit 2. (3718 aa)    
Predicted Functional Partners:
ppsC
Plipastatin synthase subunit C.
 
0.989
ppsE_2
Phthiocerol synthesis polyketide synthase type I PpsE.
0.929
pksJ
Polyketide synthase PksJ.
 
0.924
ppsE_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.
 0.891
mbtB_2
Phenyloxazoline synthase MbtB; Belongs to the ATP-dependent AMP-binding enzyme family.
 
0.838
ppsD_1
Plipastatin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
 
0.830
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.826
lgrE_1
Linear gramicidin dehydrogenase LgrE.
 
 
 0.815
lgrE_2
Linear gramicidin dehydrogenase LgrE.
 
 
 0.815
mbtB_1
Phenyloxazoline synthase MbtB.
 
0.814
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.