STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_2Putative ABC transporter ATP-binding protein YxlF. (315 aa)    
Predicted Functional Partners:
OPX44800.1
ABC-2 family transporter protein.
 0.984
ybhS
Inner membrane transport permease YbhS.
 
 
 0.945
OPX44799.1
ABC-type uncharacterized transport system.
 
   
 0.936
OPX44798.1
Hypothetical protein.
 
     0.928
tauB_1
Taurine import ATP-binding protein TauB.
 
   
 
0.897
livH_2
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
   
  0.790
OPX44485.1
ABC-2 family transporter protein.
  
 0.708
OPX43947.1
ABC-2 family transporter protein.
  
 0.703
cysNC
Bifunctional enzyme CysN/CysC; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.689
OPX45123.1
ABC-2 type transporter.
  
 
 0.640
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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