STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadA_3Cadmium, zinc and cobalt-transporting ATPase. (634 aa)    
Predicted Functional Partners:
copZ_1
Copper chaperone CopZ.
 
 
 0.864
copZ_2
Copper chaperone CopZ.
 
 0.789
OPX44888.1
Hypothetical protein; Transcriptional repressor SmtB homolog.
 
  
 0.786
cadA_1
Cadmium, zinc and cobalt-transporting ATPase.
 
 
 0.769
hflC
Modulator of FtsH protease HflC; HflC and HflK could regulate a protease.
      0.576
hflK_2
Modulator of FtsH protease HflK; HflC and HflK could encode or regulate a protease.
       0.515
hflK_1
Modulator of FtsH protease HflK.
      0.514
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.431
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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