Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
korA_12-oxoglutarate oxidoreductase subunit KorA. (351 aa)    
Predicted Functional Partners:
korB_1
2-oxoglutarate oxidoreductase subunit KorB.
 0.997
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 0.996
porC_2
Pyruvate synthase subunit PorC.
 
 0.984
nuoI
NADH-quinone oxidoreductase subunit I.
 
 
 0.961
korB_2
2-oxoglutarate oxidoreductase subunit KorB.
 0.942
porB
Pyruvate synthase subunit PorB.
 
 0.925
gltB_2
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.915
porD
Pyruvate synthase subunit PorD.
  
 0.911
porC_1
Pyruvate synthase subunit PorC.
  
 0.862
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.832
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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