STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB_3Endo-1,4-beta-xylanase B. (327 aa)    
Predicted Functional Partners:
xsa
Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
 0.918
OPX43793.1
Non-reducing end alpha-L-arabinofuranosidase BoGH43A precursor; Belongs to the glycosyl hydrolase 43 family.
 
 0.894
xghA_1
Xyloglucanase Xgh74A precursor.
 
     0.868
OPX43402.1
Hypothetical protein.
 
     0.846
OPX45688.1
Non-reducing end alpha-L-arabinofuranosidase BoGH43B precursor; Belongs to the glycosyl hydrolase 43 family.
 
 0.824
axe1-6A
Carbohydrate acetyl esterase/feruloyl esterase precursor.
 
   0.809
aguA
Xylan alpha-(1->2)-glucuronosidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.790
araQ_8
L-arabinose transport system permease protein AraQ.
     
 0.775
celCCA_2
Endoglucanase A precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.765
xynA_2
Endo-1,4-beta-xylanase A precursor; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.754
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.