STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX43897.1Iron hydrogenase 1. (574 aa)    
Predicted Functional Partners:
hndC_4
NADP-reducing hydrogenase subunit HndC.
 
 
 0.985
hndC_3
NADP-reducing hydrogenase subunit HndC.
   
 0.984
OPX43898.1
Respiratory-chain NADH dehydrogenase 24 Kd subunit.
 
 0.968
hndC_1
NADP-reducing hydrogenase subunit HndC.
 
 
 0.962
OPX43896.1
Stage II sporulation protein SpoIIE.
 
     0.960
hndB
NADP-reducing hydrogenase subunit HndB.
 
 
 0.795
hndA_3
NADP-reducing hydrogenase subunit HndA.
  
 0.777
OPX43895.1
Hypothetical protein.
       0.731
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
    
 0.715
acrA_1
acryloyl-CoA reductase electron transfer subunit beta.
   
 0.670
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.