STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycaDPutative MFS-type transporter YcaD. (388 aa)    
Predicted Functional Partners:
ppsB
Plipastatin synthase subunit B; Belongs to the ATP-dependent AMP-binding enzyme family.
 
   
 0.748
eryA
Erythronolide synthase, modules 5 and 6.
     
 0.630
pabB_2
Aminodeoxychorismate synthase component 1.
    
 0.583
trpE
Anthranilate synthase component 1.
    
 0.583
pksJ
Polyketide synthase PksJ.
     
 0.482
metH_1
Methionine synthase.
   
 
  0.473
yitJ_2
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.
   
 
  0.473
ppsC
Plipastatin synthase subunit C.
  
  
 0.433
OPX43968.1
FMN-binding domain protein.
       0.411
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.