STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndhI_3NAD(P)H-quinone oxidoreductase subunit I. (385 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 0.997
hndD_3
NADP-reducing hydrogenase subunit HndC.
  
 0.991
hycD_2
Formate hydrogenlyase subunit 4.
  
 0.991
OPX42082.1
Respiratory-chain NADH dehydrogenase, 30 Kd subunit.
  
 0.991
hndC_4
NADP-reducing hydrogenase subunit HndC.
  
 0.987
hndC_3
NADP-reducing hydrogenase subunit HndC.
  
 0.986
hycE_1
Formate hydrogenlyase subunit 5 precursor.
  
 0.977
mrpA
Na(+)/H(+) antiporter subunit A.
  
 0.974
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.973
pksJ
Polyketide synthase PksJ.
  
 0.966
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.