STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
korA_22-oxoglutarate oxidoreductase subunit KorA. (559 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 0.999
korB_1
2-oxoglutarate oxidoreductase subunit KorB.
 
 0.999
korB_2
2-oxoglutarate oxidoreductase subunit KorB.
 0.999
porB
Pyruvate synthase subunit PorB.
  
 0.996
porD
Pyruvate synthase subunit PorD.
  
 0.966
hycG_1
Formate hydrogenlyase subunit 7.
  
 0.953
pckG
Phosphoenolpyruvate carboxykinase; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.
   
 
 0.945
gltB_2
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.943
ndhI_3
NAD(P)H-quinone oxidoreductase subunit I.
  
 0.943
adhE
Aldehyde-alcohol dehydrogenase.
  
 0.939
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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