STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX43448.1Stage III sporulation protein SpoAB. (172 aa)    
Predicted Functional Partners:
OPX43449.1
Hypothetical protein.
 
  
 0.997
OPX43447.1
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.980
spoIIIAE
Stage III sporulation protein AE precursor.
 
  
 0.975
OPX43443.1
Hypothetical protein.
 
  
 0.966
OPX43446.1
Stage III sporulation protein AC/AD protein family protein.
 
  
 0.965
spoIIM
Stage II sporulation protein M.
  
  
 0.909
OPX43444.1
Stage III sporulation protein SpoIIIAF.
 
  
 0.905
spoIIIAH
Stage III sporulation protein AH.
 
  
 0.900
OPX46440.1
YabP family protein.
  
  
 0.828
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.799
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.