Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yteP_8Putative multiple-sugar transport system permease YteP. (298 aa)    
Predicted Functional Partners:
ycjP_2
Inner membrane ABC transporter permease protein YcjP.
 
 
 0.973
lipO_3
Lipoprotein LipO precursor.
 
 
  0.928
araQ_3
L-arabinose transport system permease protein AraQ.
 
 
 0.926
araQ_8
L-arabinose transport system permease protein AraQ.
 
 
 0.926
ycjP_1
Inner membrane ABC transporter permease protein YcjP.
 
 
 0.896
sugB_2
Trehalose transport system permease protein SugB.
 
 
 0.847
sugB_1
Trehalose transport system permease protein SugB.
 
 
 0.835
araQ_7
L-arabinose transport system permease protein AraQ.
 
 
 0.835
lipO_2
Lipoprotein LipO precursor.
 
 
 0.815
araQ_1
L-arabinose transport system permease protein AraQ.
 
 
 0.801
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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