STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX43145.1Hypothetical protein; Anaerobic sulfatase-maturating enzyme homolog YdeM. (447 aa)    
Predicted Functional Partners:
OPX43144.1
Hypothetical protein.
 
 
 
 0.993
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase.
       0.753
dnaC_2
DNA replication protein DnaC.
  
     0.622
speA_1
Arginine decarboxylase.
 
     0.489
trmK
tRNA (adenine(22)-N(1))-methyltransferase.
 
     0.482
mdeA_3
Methionine gamma-lyase.
  
     0.436
alkA
DNA-3-methyladenine glycosylase.
  
     0.431
OPX41974.1
Hypothetical protein.
  
     0.427
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.