STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX43040.1Carbohydrate binding domain protein. (140 aa)    
Predicted Functional Partners:
mtrB_1
Transcription attenuation protein MtrB.
  
     0.730
OPX43663.1
HutP.
  
     0.695
OPX42632.1
Glycogen synthase.
  
     0.683
pnpB
P-benzoquinone reductase.
  
     0.601
OPX45865.1
YtxC-like family protein.
  
     0.591
cga
Glucoamylase precursor.
  
   
 0.569
OPX45520.1
FAD dependent oxidoreductase.
  
     0.548
OPX45805.1
Hypothetical protein.
  
     0.547
pdaA_3
peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor.
       0.531
agrB_3
Accessory protein regulator protein B.
  
     0.530
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.