STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX43124.1Putative thiamine biosynthesis protein. (360 aa)    
Predicted Functional Partners:
cmpB_2
Bicarbonate transport system permease protein CmpB.
 
 
  0.966
ssuC_12
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
  0.966
cmpC
Bicarbonate transport ATP-binding protein CmpC.
 
 
 0.951
dosC
Diguanylate cyclase DosC.
 
   
  0.899
pleD
Response regulator PleD.
 
   
  0.894
gmr
Cyclic di-GMP phosphodiesterase Gmr.
      0.887
cph2_1
Phytochrome-like protein cph2.
      0.806
cph2_2
Phytochrome-like protein cph2.
 
   
  0.744
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
 
  
  0.721
barA
Signal transduction histidine-protein kinase BarA.
  
 0.699
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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