ecfT_3 protein (Ruminiclostridium hungatei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ecfT_3

Energy-coupling factor transporter transmembrane protein EcfT. (275 aa)

Predicted Functional Partners:

ykoD

0.995

OPX42882.1

0.967

ecfA2_3

0.874

ecfA1_2

0.873

cbiO

0.839

ecfA2_1

0.839

ecfA2_2

0.839

ecfA1_1

0.839

folT

0.784

bioY_2

0.762

Your Current Organism:

Ruminiclostridium hungatei

NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPX42882.1	cbiO	CLHUN_32060	CLHUN_03710	Hypothetical protein.	Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.486
OPX42882.1	ecfA1_1	CLHUN_32060	CLHUN_31320	Hypothetical protein.	Energy-coupling factor transporter ATP-binding protein EcfA1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.486
OPX42882.1	ecfA1_2	CLHUN_32060	CLHUN_35030	Hypothetical protein.	Energy-coupling factor transporter ATP-binding protein EcfA1.	0.564
OPX42882.1	ecfA2_1	CLHUN_32060	CLHUN_16390	Hypothetical protein.	Energy-coupling factor transporter ATP-binding protein EcfA2.	0.486
OPX42882.1	ecfA2_2	CLHUN_32060	CLHUN_31240	Hypothetical protein.	Energy-coupling factor transporter ATP-binding protein EcfA2; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.486
OPX42882.1	ecfA2_3	CLHUN_32060	CLHUN_35020	Hypothetical protein.	Energy-coupling factor transporter ATP-binding protein EcfA2.	0.663
OPX42882.1	ecfT_3	CLHUN_32060	CLHUN_32040	Hypothetical protein.	Energy-coupling factor transporter transmembrane protein EcfT.	0.967
OPX42882.1	ykoD	CLHUN_32060	CLHUN_32050	Hypothetical protein.	Putative HMP/thiamine import ATP-binding protein YkoD.	0.966
bioY_2	cbiO	CLHUN_34810	CLHUN_03710	Biotin transporter BioY.	Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.688
bioY_2	ecfA1_1	CLHUN_34810	CLHUN_31320	Biotin transporter BioY.	Energy-coupling factor transporter ATP-binding protein EcfA1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.882
bioY_2	ecfA2_1	CLHUN_34810	CLHUN_16390	Biotin transporter BioY.	Energy-coupling factor transporter ATP-binding protein EcfA2.	0.688
bioY_2	ecfA2_2	CLHUN_34810	CLHUN_31240	Biotin transporter BioY.	Energy-coupling factor transporter ATP-binding protein EcfA2; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.883
bioY_2	ecfT_3	CLHUN_34810	CLHUN_32040	Biotin transporter BioY.	Energy-coupling factor transporter transmembrane protein EcfT.	0.762
cbiO	OPX42882.1	CLHUN_03710	CLHUN_32060	Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Hypothetical protein.	0.486
cbiO	bioY_2	CLHUN_03710	CLHUN_34810	Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Biotin transporter BioY.	0.688
cbiO	ecfA1_1	CLHUN_03710	CLHUN_31320	Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Energy-coupling factor transporter ATP-binding protein EcfA1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.593
cbiO	ecfA1_2	CLHUN_03710	CLHUN_35030	Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Energy-coupling factor transporter ATP-binding protein EcfA1.	0.801
cbiO	ecfA2_1	CLHUN_03710	CLHUN_16390	Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Energy-coupling factor transporter ATP-binding protein EcfA2.	0.957
cbiO	ecfA2_2	CLHUN_03710	CLHUN_31240	Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Energy-coupling factor transporter ATP-binding protein EcfA2; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.610
cbiO	ecfA2_3	CLHUN_03710	CLHUN_35020	Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Energy-coupling factor transporter ATP-binding protein EcfA2.	0.802