STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX42882.1Hypothetical protein. (190 aa)    
Predicted Functional Partners:
ecfT_3
Energy-coupling factor transporter transmembrane protein EcfT.
 
 
 0.967
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
  
 0.966
ecfA2_3
Energy-coupling factor transporter ATP-binding protein EcfA2.
 
  
 0.663
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.611
ecfT_4
Energy-coupling factor transporter transmembrane protein EcfT.
  
 
 0.611
ecfA1_2
Energy-coupling factor transporter ATP-binding protein EcfA1.
  
  
 0.564
cbiQ
Cobalt transport protein CbiQ.
  
 
 0.523
ecfT_1
Energy-coupling factor transporter transmembrane protein EcfT.
  
 
 0.523
cbiO
Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
   
 
 0.486
ecfA2_1
Energy-coupling factor transporter ATP-binding protein EcfA2.
   
 
 0.486
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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