STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX42928.1Hypothetical protein. (338 aa)    
Predicted Functional Partners:
OPX42039.1
Hypothetical protein.
 
 
 0.824
pknD_2
Serine/threonine-protein kinase PknD.
  
     0.773
eccCb1
ESX-1 secretion system protein EccCb1.
  
    0.771
eccCa1
ESX-1 secretion system protein EccCa1.
  
    0.771
yrrB_3
TPR repeat-containing protein YrrB.
  
     0.771
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
 
 
  0.750
OPX42929.1
Hypothetical protein.
       0.746
OPX42280.1
Endoglucanase E1 precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
  0.735
OPX45027.1
Endoglucanase E1 precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
  0.686
manA_4
Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 26 family.
  
  
  0.680
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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