STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fosBMetallothiol transferase FosB. (128 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.879
OPX44874.1
Cobalt-dependent inorganic pyrophosphatase.
    
 0.851
glpE
Thiosulfate sulfurtransferase GlpE.
   
 
 0.791
OPX43495.1
Putative metallo-hydrolase.
     
 0.777
accA1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
  
 
 0.749
korA_2
2-oxoglutarate oxidoreductase subunit KorA.
     
 0.738
deoR
Deoxyribonucleoside regulator.
       0.737
puuB
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.686
trpB_2
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.686
ndhI_3
NAD(P)H-quinone oxidoreductase subunit I.
  
 
 0.678
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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