STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX42644.1D-alanyl-D-alanine carboxypeptidase precursor. (434 aa)    
Predicted Functional Partners:
guaA_2
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.781
yfiR
Putative HTH-type transcriptional regulator YfiR.
     
 0.749
gloB_2
Hydroxyacylglutathione hydrolase.
     
 0.536
racX
Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family.
 
  
 0.529
blaZ
Beta-lactamase precursor.
    
 0.489
nagZ
Beta-hexosaminidase precursor.
 
 
 0.480
OPX43605.1
Beta-glucosidase BoGH3B precursor.
 
 
 0.479
ppsC
Plipastatin synthase subunit C.
  
  
 0.451
OPX42489.1
Membrane dipeptidase.
 
    0.449
dacF_1
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
     
 0.436
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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