STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tamTrans-aconitate 2-methyltransferase. (204 aa)    
Predicted Functional Partners:
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.825
tpa
Taurine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.825
ppsD_1
Plipastatin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.818
mbtB_1
Phenyloxazoline synthase MbtB.
  
 
 0.818
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.816
pksJ
Polyketide synthase PksJ.
  
 
 0.811
epsN
Putative pyridoxal phosphate-dependent aminotransferase EpsN; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.774
vioA
dTDP-4-amino-4,6-dideoxy-D-glucose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.774
gltB_2
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.744
aroF_2
Phospho-2-dehydro-3-deoxyheptonate aldolase.
    
 0.736
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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