STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (438 aa)    
Predicted Functional Partners:
xylB_2
Xylulose kinase.
 
 
 0.993
nagC_2
N-acetylglucosamine repressor.
    
 0.924
xylB_1
Xylulose kinase.
 
 
 0.866
glcK_1
Glucokinase.
    
 0.852
iolC_1
5-dehydro-2-deoxygluconokinase.
    
 0.841
lsrK
Autoinducer 2 kinase LsrK.
  
 
 0.829
OPX45608.1
Beta-galactosidase BoGH2A precursor; Belongs to the glycosyl hydrolase 2 family.
    
 0.791
OPX46053.1
Hexokinase.
     
 0.785
gatD
Galactitol-1-phosphate 5-dehydrogenase.
     
 0.784
gutB_2
Sorbitol dehydrogenase.
     
 0.784
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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