STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhjBPutative HTH-type transcriptional regulator YhjB. (255 aa)    
Predicted Functional Partners:
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 0.978
barA
Signal transduction histidine-protein kinase BarA.
  
 0.948
arcB
Aerobic respiration control sensor protein ArcB.
   
 0.908
liaS
Sensor histidine kinase LiaS.
 
 0.858
zraS_1
Sensor protein ZraS.
   
 0.784
OPX43268.1
Response regulator receiver domain protein.
   
 0.769
degS
Signal transduction histidine-protein kinase/phosphatase DegS.
 
 0.763
cph1_3
Phytochrome-like protein cph1.
  
 0.746
fliN
Flagellar motor switch protein FliN.
  
 
 0.704
cph2_2
Phytochrome-like protein cph2.
  
 0.671
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.