STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcuSSensor histidine kinase DcuS. (287 aa)    
Predicted Functional Partners:
barA
Signal transduction histidine-protein kinase BarA.
  
 
 0.809
arcB
Aerobic respiration control sensor protein ArcB.
   
 
 0.802
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
  
 0.777
agrB_3
Accessory protein regulator protein B.
 
  
  0.753
dpiB
Sensor histidine kinase DpiB.
  
  
0.751
lytR_2
Sensory transduction protein LytR.
 
  
 0.740
OPX43268.1
Response regulator receiver domain protein.
     
 0.708
agrB_2
Accessory protein regulator protein B; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family.
    
  0.659
OPX42415.1
Putative AgrB-like protein.
    
  0.659
OPX42145.1
Hypothetical protein; NfeD-like C-terminal, partner-binding.
       0.518
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.