SMRZ_LOCUS2712 protein (Schistosoma margrebowiei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMRZ_LOCUS2712

Complex1_49kDa domain-containing protein. (349 aa)

Predicted Functional Partners:

A0A183LDQ7

0.999

SMRZ_LOCUS5827

0.999

SMRZ_LOCUS9204

0.999

A0A183M5J6

0.999

A0A183M6L5

0.999

A0A183MEL0

0.999

A0A183MGY8

0.999

A0A183MHK7

0.999

A0A183MHR8

0.999

A0A183MMP6

0.999

Your Current Organism:

Schistosoma margrebowiei

NCBI taxonomy Id: 48269
Other names: S. margrebowiei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183LDQ7	A0A183M5J6	A0A183LDQ7	A0A183M5J6	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
A0A183LDQ7	A0A183M6L5	A0A183LDQ7	A0A183M6L5	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Uncharacterized protein.	0.999
A0A183LDQ7	A0A183MEL0	A0A183LDQ7	A0A183MEL0	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.995
A0A183LDQ7	A0A183MGY8	A0A183LDQ7	A0A183MGY8	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	dNK domain-containing protein.	0.999
A0A183LDQ7	A0A183MHK7	A0A183LDQ7	A0A183MHK7	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Uncharacterized protein.	0.999
A0A183LDQ7	A0A183MHR8	A0A183LDQ7	A0A183MHR8	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Uncharacterized protein.	0.999
A0A183LDQ7	A0A183MMP6	A0A183LDQ7	A0A183MMP6	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.999
A0A183LDQ7	SMRZ_LOCUS2712	A0A183LDQ7	A0A183LFY7	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Complex1_49kDa domain-containing protein.	0.999
A0A183LDQ7	SMRZ_LOCUS5827	A0A183LDQ7	A0A183LPV2	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	Uncharacterized protein.	0.999
A0A183LDQ7	SMRZ_LOCUS9204	A0A183LDQ7	A0A183LZH8	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	L51_S25_CI-B8 domain-containing protein.	0.999
A0A183M5J6	A0A183LDQ7	A0A183M5J6	A0A183LDQ7	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.999
A0A183M5J6	A0A183M6L5	A0A183M5J6	A0A183M6L5	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Uncharacterized protein.	0.999
A0A183M5J6	A0A183MEL0	A0A183M5J6	A0A183MEL0	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.996
A0A183M5J6	A0A183MGY8	A0A183M5J6	A0A183MGY8	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	dNK domain-containing protein.	0.999
A0A183M5J6	A0A183MHK7	A0A183M5J6	A0A183MHK7	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Uncharacterized protein.	0.986
A0A183M5J6	A0A183MHR8	A0A183M5J6	A0A183MHR8	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Uncharacterized protein.	0.999
A0A183M5J6	A0A183MMP6	A0A183M5J6	A0A183MMP6	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.999
A0A183M5J6	SMRZ_LOCUS2712	A0A183M5J6	A0A183LFY7	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Complex1_49kDa domain-containing protein.	0.999
A0A183M5J6	SMRZ_LOCUS5827	A0A183M5J6	A0A183LPV2	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	Uncharacterized protein.	0.999
A0A183M5J6	SMRZ_LOCUS9204	A0A183M5J6	A0A183LZH8	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	L51_S25_CI-B8 domain-containing protein.	0.999