SMRZ_LOCUS6625 protein (Schistosoma margrebowiei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMRZ_LOCUS6625

Uncharacterized protein. (413 aa)

Predicted Functional Partners:

A0A183MI57

0.982

A0A183MGD4

0.974

A0A183N734

0.968

A0A183MLT1

0.958

A0A183N4V2

0.958

A0A183MLT3

0.942

SMRZ_LOCUS3939

0.939

SMRZ_LOCUS8957

0.925

SMRZ_LOCUS1469

0.916

SMRZ_LOCUS4382

0.895

Your Current Organism:

Schistosoma margrebowiei

NCBI taxonomy Id: 48269
Other names: S. margrebowiei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183MGD4	A0A183MI57	A0A183MGD4	A0A183MI57	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A183MGD4	A0A183MLT1	A0A183MGD4	A0A183MLT1	RPOLD domain-containing protein.	Uncharacterized protein.	0.962
A0A183MGD4	A0A183MLT3	A0A183MGD4	A0A183MLT3	RPOLD domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.962
A0A183MGD4	A0A183N4V2	A0A183MGD4	A0A183N4V2	RPOLD domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.962
A0A183MGD4	A0A183N734	A0A183MGD4	A0A183N734	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
A0A183MGD4	SMRZ_LOCUS1469	A0A183MGD4	A0A183LCE4	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.999
A0A183MGD4	SMRZ_LOCUS3939	A0A183MGD4	A0A183LJG4	RPOLD domain-containing protein.	Uncharacterized protein.	0.997
A0A183MGD4	SMRZ_LOCUS4382	A0A183MGD4	A0A183LKQ7	RPOLD domain-containing protein.	Uncharacterized protein.	0.996
A0A183MGD4	SMRZ_LOCUS6625	A0A183MGD4	A0A183LS50	RPOLD domain-containing protein.	Uncharacterized protein.	0.974
A0A183MGD4	SMRZ_LOCUS8957	A0A183MGD4	A0A183LYT2	RPOLD domain-containing protein.	RPOL4c domain-containing protein.	0.999
A0A183MI57	A0A183MGD4	A0A183MI57	A0A183MGD4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.999
A0A183MI57	A0A183MLT1	A0A183MI57	A0A183MLT1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.974
A0A183MI57	A0A183MLT3	A0A183MI57	A0A183MLT3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.965
A0A183MI57	A0A183N4V2	A0A183MI57	A0A183N4V2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.974
A0A183MI57	A0A183N734	A0A183MI57	A0A183N734	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
A0A183MI57	SMRZ_LOCUS1469	A0A183MI57	A0A183LCE4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_L_2 domain-containing protein.	0.999
A0A183MI57	SMRZ_LOCUS3939	A0A183MI57	A0A183LJG4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.997
A0A183MI57	SMRZ_LOCUS4382	A0A183MI57	A0A183LKQ7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.991
A0A183MI57	SMRZ_LOCUS6625	A0A183MI57	A0A183LS50	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.982
A0A183MI57	SMRZ_LOCUS8957	A0A183MI57	A0A183LYT2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999