A0A183N5G7 protein (Schistosoma margrebowiei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A183N5G7

Uncharacterized protein. (254 aa)

Predicted Functional Partners:

A0A183MGX3

0.922

A0A183MCI7

0.918

SMRZ_LOCUS1778

0.917

A0A183N8Q4

0.916

SMRZ_LOCUS3409

0.914

A0A183MHY6

0.912

SMRZ_LOCUS8031

0.910

A0A183MSJ7

0.905

SMRZ_LOCUS1153

0.900

SMRZ_LOCUS1513

0.881

Your Current Organism:

Schistosoma margrebowiei

NCBI taxonomy Id: 48269
Other names: S. margrebowiei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183MCI7	A0A183MGX3	A0A183MCI7	A0A183MGX3	Ribosomal_S5_C domain-containing protein.	Uncharacterized protein.	0.999
A0A183MCI7	A0A183MHY6	A0A183MCI7	A0A183MHY6	Ribosomal_S5_C domain-containing protein.	Uncharacterized protein.	0.999
A0A183MCI7	A0A183MSJ7	A0A183MCI7	A0A183MSJ7	Ribosomal_S5_C domain-containing protein.	Uncharacterized protein.	0.999
A0A183MCI7	A0A183N5G7	A0A183MCI7	A0A183N5G7	Ribosomal_S5_C domain-containing protein.	Uncharacterized protein.	0.918
A0A183MCI7	A0A183N8Q4	A0A183MCI7	A0A183N8Q4	Ribosomal_S5_C domain-containing protein.	Uncharacterized protein.	0.999
A0A183MCI7	SMRZ_LOCUS1153	A0A183MCI7	A0A183LBH8	Ribosomal_S5_C domain-containing protein.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.976
A0A183MCI7	SMRZ_LOCUS1513	A0A183MCI7	A0A183LCI8	Ribosomal_S5_C domain-containing protein.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.993
A0A183MCI7	SMRZ_LOCUS1778	A0A183MCI7	A0A183LDA3	Ribosomal_S5_C domain-containing protein.	Uncharacterized protein.	0.998
A0A183MCI7	SMRZ_LOCUS3409	A0A183MCI7	A0A183LHY4	Ribosomal_S5_C domain-containing protein.	Uncharacterized protein.	0.999
A0A183MCI7	SMRZ_LOCUS8031	A0A183MCI7	A0A183LW56	Ribosomal_S5_C domain-containing protein.	Ribosomal_S10 domain-containing protein.	0.993
A0A183MGX3	A0A183MCI7	A0A183MGX3	A0A183MCI7	Uncharacterized protein.	Ribosomal_S5_C domain-containing protein.	0.999
A0A183MGX3	A0A183MHY6	A0A183MGX3	A0A183MHY6	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183MGX3	A0A183MSJ7	A0A183MGX3	A0A183MSJ7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183MGX3	A0A183N5G7	A0A183MGX3	A0A183N5G7	Uncharacterized protein.	Uncharacterized protein.	0.922
A0A183MGX3	A0A183N8Q4	A0A183MGX3	A0A183N8Q4	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183MGX3	SMRZ_LOCUS1153	A0A183MGX3	A0A183LBH8	Uncharacterized protein.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.964
A0A183MGX3	SMRZ_LOCUS1513	A0A183MGX3	A0A183LCI8	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.988
A0A183MGX3	SMRZ_LOCUS1778	A0A183MGX3	A0A183LDA3	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A183MGX3	SMRZ_LOCUS3409	A0A183MGX3	A0A183LHY4	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183MGX3	SMRZ_LOCUS8031	A0A183MGX3	A0A183LW56	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.999